Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs17292069 chr6:83603543 C/T 1.53E-14 132 43.68 33.88 4.78 KM Plot
TGCT rs17313059 chr6:28333396 T/C 0 134 45.83 29.65 0.57 KM Plot
TGCT rs17313276 chr6:28337749 G/A 0 134 45.83 29.65 0.57 KM Plot
TGCT rs173234 chr17:39356271 G/T 6.24E-7 134 13.17 46.03 42.18 KM Plot
TGCT rs17339836 chr7:128681062 C/T 1.69E-5 134 42.27 30.3 17.1 KM Plot
TGCT rs17340542 chr7:128720045 C/T 1.67E-5 134 17.1 31.17 42.27 KM Plot
TGCT rs17393066 chr6:28364793 A/G 9.11E-5 134 46.3 23.6 88.33 KM Plot
TGCT rs17424602 chr7:128687940 A/G 1.69E-5 134 42.27 30.3 17.1 KM Plot
TGCT rs17535295 chr5:1797350 T/C 4.04E-7 133 42.27 45.83 20.6 KM Plot
TGCT rs17535337 chr5:1797432 T/C 4.04E-7 133 42.27 45.83 20.6 KM Plot
TGCT rs17535721 chr5:1806653 C/T 5.82E-12 134 46.77 36.63 18.85 KM Plot
TGCT rs17599667 chr19:30350666 C/T 0.000152 134 29.4 51.32 37.62 KM Plot
TGCT rs17678195 chr16:83292805 T/C 1.81E-6 134 42.18 32.58 49.37 KM Plot
TGCT rs17687052 chr6:15225528 G/C 7.25E-5 131 37.62 45.1 NA KM Plot
TGCT rs17714259 chr7:127147097 T/A 1.49E-5 134 42.1 37.53 100.87 KM Plot